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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147727858_147728167_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
147727858 - 147728167
Intron Length:
310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTAATGAAAG
Flanking Amino Acid:
LELAVQRGTLSQMLSAVMLL
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
86.8
0.83
0.7
84.4
23.4
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
46.5
-0.4
2
57.93
42.3

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574