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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147728279_147729066_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
147728279 - 147729066
Intron Length:
788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
GATTTTTAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGATTTTTAAAT
Flanking Amino Acid:
ATKFLRSVVTGDVHGAPSTK
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
82.3
32.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
66.6
0.37
1
63.3
41.9
Minor 5ss
44.3
-0.6
2.8
53.4
43.8
Minor BPS
67.8
0.64
1.3
78.53
37.3

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574