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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147729224_147730565_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
147729224 - 147730565
Intron Length:
1342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCTA
5'SS Class:
strong_major
3'SS Sequence:
CTGTGATCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
ATTACTGTGATC
Flanking Amino Acid:
FAFLRRAWRSGEDADLCSEL
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78
38.6
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
65.7
0.35
0.9
62.7
38.7
Minor 5ss
36.4
-1.5
3.3
49.3
46.9
Minor BPS
48.6
-0.1
2
63.98
36

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574