Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147730667_147732250_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

147730667 - 147732250

Intron Length:

1584

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATGACA

5'SS Class:

strong_major

3'SS Sequence:

TGATTTTTTTTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATGAT

U12 Branch Point Sequence:

ATAATGCGAATA

Flanking Amino Acid:

SIPLPTVDKKSPRPVGKGVE

Intron Amino Acid Position:

182

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

74.2

35.8

Major BPS

75.8

0.64

65.8

Major PPT

82.4

0.73

0.8

81.4

36.1

Minor 5ss

32.6

-2

3.1

41.2

44.8

Minor BPS

38.4

-0.8

2.1

48.77

35.2

Associated Gene:

Gene:

HERC2

Ensembl Gene ID:

ENSAPLG00000003410

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003662

147651096 - 147757669

106574