Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147741036_147747026_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

147741036 - 147747026

Intron Length:

5991

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGTTTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTCCTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGCTTAA

U12 Branch Point Sequence:

TTTTTTTTTTCT

Flanking Amino Acid:

TQSSELPPRKDDSTECQTAS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.9

88.1

28.7

Major BPS

58.3

0.21

1.1

49.4

37.6

Major PPT

0.83

0.6

86.1

20.7

Minor 5ss

45.1

-0.5

3.1

44.3

Minor BPS

45.5

-0.2

3.6

82.93

38.6

Associated Gene:

Gene:

HERC2

Ensembl Gene ID:

ENSAPLG00000003410

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003662

147651096 - 147757669

106574