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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147747142_147757597_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
147747142 - 147757597
Intron Length:
10456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAC
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
DSKWLKTDLQLAFTRDGLCG
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.6
37.3
Major BPS
69.1
0.48
1
70
32.1
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
28.5
-2.5
3.1
39.7
45.9
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574