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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147791725_147795570_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
147791725 - 147795570
Intron Length:
3846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTGACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTCTCTTGACA
Flanking Amino Acid:
DIVWWSGTIAMALGQIGNFL
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
88.1
25.2
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
82.7
0.74
0.9
79.9
32.1
Minor 5ss
42
-0.9
2.8
55.1
35.9
Minor BPS
77.4
0.86
1.1
83.73
29.3

Associated Gene:

Gene:
NIPA1
Ensembl Gene ID:
ENSAPLG00000005169
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005342
147789327 - 147798732
9406