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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147797162_147798220_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
147797162 - 147798220
Intron Length:
1059

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTTGT
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
GTGCTGTTATCT
Flanking Amino Acid:
AELEEKLTNPVFVGYLCIVL
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.1
71.8
40.6
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
40.9
-1
3.1
59.4
45
Minor BPS
46
-0.2
2.2
65.5
45

Associated Gene:

Gene:
NIPA1
Ensembl Gene ID:
ENSAPLG00000005169
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005342
147789327 - 147798732
9406