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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147814437_147814904_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
147814437 - 147814904
Intron Length:
468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TACTACTCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTTCTTATTA
Flanking Amino Acid:
EWLWWAGLLSMGAGEVANFA
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
76.7
0.6
0.9
69.9
35.9
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
66.9
0.53
1.5
74.26
38.3

Associated Gene:

Gene:
NIPA2
Ensembl Gene ID:
ENSAPLG00000026293
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036753
147813001 - 147817333
4333