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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147814996_147815605_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
147814996 - 147815605
Intron Length:
610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
TGGTGTATATTT
Flanking Amino Acid:
TPLGALSVLVSAILSSFFLN
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
88.6
0.87
0.6
89
20.1
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
43
-0.4
2.1
60.92
43.5

Associated Gene:

Gene:
NIPA2
Ensembl Gene ID:
ENSAPLG00000026293
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036753
147813001 - 147817333
4333