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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147815767_147816695_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
147815767 - 147816695
Intron Length:
929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
CCCCCAAACACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
TTCCCCCCAAAC
Flanking Amino Acid:
HEMSNKLGDPGFVVFATLVV
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
57.5
0.17
0.9
50
30.4
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
47.5
-0.2
2
62.69
42

Associated Gene:

Gene:
NIPA2
Ensembl Gene ID:
ENSAPLG00000026293
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036753
147813001 - 147817333
4333