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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147847560_147847610_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
147847560 - 147847610
Intron Length:
51

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTCTGAAAA
5'SS Class:
weak_major
3'SS Sequence:
CTGCTACAAAGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTGGAA
U12 Branch Point Sequence:
TCTGCTACAAAG
Flanking Amino Acid:
FQPSQTLLEQPNGAVVQVDI
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.7
0.23
1.3
63.3
36.7
Major BPS
62.2
0.3
1.4
63.4
44.3
Major PPT
45.6
-0.2
1.7
47.9
38.7
Minor 5ss
36
-1.6
2.8
40.7
39.5
Minor BPS
43.1
-0.6
2
49.48
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020705
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037104
147847524 - 147854572
7049