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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147851018_147853411_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
147851018 - 147853411
Intron Length:
2394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TGCTGCTCATTG
Flanking Amino Acid:
FESEDLTSIVELDGLIEINK
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.8
83.1
28.6
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
87.8
0.85
0.7
84.9
29.9
Minor 5ss
33.3
-1.9
3.4
45.9
43.7
Minor BPS
42.8
-0.6
2.1
47.89
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020705
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037104
147847524 - 147854572
7049