Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147871038_147871215_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

147871038 - 147871215

Intron Length:

178

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCTGTTGT

5'SS Class:

major

3'SS Sequence:

GTTTTCTCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTGAT

U12 Branch Point Sequence:

TTGATTCTATCT

Flanking Amino Acid:

EPPPSSLLYQPNFNTNFEDR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.5

0.55

1.3

71.4

41.2

Major BPS

87.6

0.93

0.8

77.4

37.3

Major PPT

86.8

0.83

0.7

81.5

30.6

Minor 5ss

43.4

-0.7

2.6

59.2

45.2

Minor BPS

47.2

-0.1

1.9

68.58

42.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026011

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021173

147870903 - 147871332

430