About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147893228_147894065_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
147893228 - 147894065
Intron Length:
838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTTTGTCTT
5'SS Class:
major
3'SS Sequence:
TCTTCTCCTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AATTTAATAACT
Flanking Amino Acid:
NSLHNYIMTRILHSTGLEFQ
Intron Amino Acid Position:
960

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.1
0.4
1.2
66.5
44.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
75.8
0.58
1
79.8
26.1
Minor 5ss
42.2
-0.9
2.8
52.1
44.5
Minor BPS
56.6
0.29
1.9
77.95
37.4

Associated Gene:

Gene:
TUBGCP5
Ensembl Gene ID:
ENSAPLG00000005776
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005991
147890460 - 147912930
22471