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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147895360_147895479_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
147895360 - 147895479
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTGT
5'SS Class:
strong_major
3'SS Sequence:
CTGCTCTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TCTGTCTTATCC
Flanking Amino Acid:
TLDGLTLSYKVPWPVDIVIS
Intron Amino Acid Position:
860

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.8
39.1
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
74.3
0.55
0.8
72.9
31.9
Minor 5ss
37.8
-1.4
3.5
55.9
48.3
Minor BPS
59.8
0.29
1.7
69.18
42.9

Associated Gene:

Gene:
TUBGCP5
Ensembl Gene ID:
ENSAPLG00000005776
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005991
147890460 - 147912930
22471