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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147895565_147895848_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
147895565 - 147895848
Intron Length:
284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTGCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAA
U12 Branch Point Sequence:
TCACCATCAATA
Flanking Amino Acid:
VGQRYPEDSSRLSISFESVD
Intron Amino Acid Position:
831

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
36.6
Major BPS
56.5
0.16
0.9
63.3
29.1
Major PPT
78.5
0.64
0.8
76
32.6
Minor 5ss
37.6
-1.4
3.2
50.9
45.7
Minor BPS
48.7
-0.1
1.8
59.52
40

Associated Gene:

Gene:
TUBGCP5
Ensembl Gene ID:
ENSAPLG00000005776
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005991
147890460 - 147912930
22471