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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147901789_147902710_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
147901789 - 147902710
Intron Length:
922

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGATA
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AAATATTCAACA
Flanking Amino Acid:
FDPAKEFIIQRNKNVPVNHR
Intron Amino Acid Position:
551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
78.7
37.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.9
0.9
0.7
85
29.3
Minor 5ss
34.4
-1.8
3.5
47.6
48.1
Minor BPS
51.4
0.04
1.7
61.65
37.7

Associated Gene:

Gene:
TUBGCP5
Ensembl Gene ID:
ENSAPLG00000005776
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005991
147890460 - 147912930
22471