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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147902827_147903546_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
147902827 - 147903546
Intron Length:
720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGGGAA
5'SS Class:
major
3'SS Sequence:
CCTTTAAATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTCCTTTAAAT
Flanking Amino Acid:
DSVGEASEQTVSLLFSLWVE
Intron Amino Acid Position:
513

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
60.5
40.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
73.9
0.54
1
71.1
37.7
Minor 5ss
27.6
-2.6
3.7
37
47.6
Minor BPS
77.7
0.95
1.3
90.96
31.7

Associated Gene:

Gene:
TUBGCP5
Ensembl Gene ID:
ENSAPLG00000005776
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005991
147890460 - 147912930
22471