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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147904185_147904487_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
147904185 - 147904487
Intron Length:
303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TGATTCTGAAAA
Flanking Amino Acid:
NDIIVTHLTHNCLRSVLEQI
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
80.8
34.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
44.3
-0.6
2.9
62.8
41.9
Minor BPS
58.7
0.27
1.5
67.41
38

Associated Gene:

Gene:
TUBGCP5
Ensembl Gene ID:
ENSAPLG00000005776
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005991
147890460 - 147912930
22471