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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147904582_147905127_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
147904582 - 147905127
Intron Length:
546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ACTCTTTTCATT
Flanking Amino Acid:
TETQVIRETLWLLSGVKKLF
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
70.5
33.4
Major BPS
100
1.24
0.5
100
0
Major PPT
77.4
0.62
1
75.9
37.7
Minor 5ss
30.9
-2.2
3.3
36.6
41.5
Minor BPS
49.5
0.05
1.7
66.47
39.2

Associated Gene:

Gene:
TUBGCP5
Ensembl Gene ID:
ENSAPLG00000005776
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005991
147890460 - 147912930
22471