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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147911511_147911586_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
147911511 - 147911586
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCATTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
NSHKVERTIEGIHEKLIVHS
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
78.3
32.5
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
84.7
0.78
0.7
86.7
25.9
Minor 5ss
38.9
-1.3
2.9
44.3
43.6
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
TUBGCP5
Ensembl Gene ID:
ENSAPLG00000005776
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005991
147890460 - 147912930
22471