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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147911641_147912733_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
147911641 - 147912733
Intron Length:
1093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCCGCCCC
5'SS Class:
major
3'SS Sequence:
ATTTCTTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
GATTTCTTACAC
Flanking Amino Acid:
TALDFAWSNFRFHRFLDVNS
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.5
0.29
1.4
52.8
42.4
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
78
0.63
0.9
73.3
35.6
Minor 5ss
33.5
-1.9
3.1
43.7
43.5
Minor BPS
56
0.17
1.7
65.35
39.8

Associated Gene:

Gene:
TUBGCP5
Ensembl Gene ID:
ENSAPLG00000005776
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005991
147890460 - 147912930
22471