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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147964501_147969244_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
147964501 - 147969244
Intron Length:
4744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TTCTCCTTTATT
Flanking Amino Acid:
RCLTSPQVYDNQEQLREEDS
Intron Amino Acid Position:
633

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
80.1
34.8
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
84.6
0.78
0.8
77
35.9
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
74.6
0.86
1.6
87.9
37.7

Associated Gene:

Gene:
SLC9A7
Ensembl Gene ID:
ENSAPLG00000005702
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005965
147964252 - 148025962
61711