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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147969351_147972332_R

Intron Information:

Intron Rank:
15
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
147969351 - 147972332
Intron Length:
2982

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATCCTTC
5'SS Class:
strong_minor
3'SS Sequence:
TTAACTACTGAAG|T
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTTTCCTTAACT
Flanking Amino Acid:
LFRLWYSFDHNYLKPILTHS
Intron Amino Acid Position:
597

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.1
0.21
1.2
59.5
40.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
62.3
0.28
1.1
61.9
38.6
Minor 5ss
91
1.38
0.9
84.7
25.1
Minor BPS
93.1
1.44
0.8
100
28.8

Associated Gene:

Gene:
SLC9A7
Ensembl Gene ID:
ENSAPLG00000005702
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005965
147964252 - 148025962
61711