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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147972416_147975010_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
147972416 - 147975010
Intron Length:
2595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
ATCTTATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTATCTTATTT
Flanking Amino Acid:
TNDSFQVLQGDGPDSERRNR
Intron Amino Acid Position:
570

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
80.7
33.7
Major BPS
80
0.75
1
78.6
31
Major PPT
80.1
0.68
0.8
78.2
34.6
Minor 5ss
38.7
-1.3
2.8
47.9
41.8
Minor BPS
67
0.61
1.6
84.12
37

Associated Gene:

Gene:
SLC9A7
Ensembl Gene ID:
ENSAPLG00000005702
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005965
147964252 - 148025962
61711