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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147975075_147978775_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
147975075 - 147978775
Intron Length:
3701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACACTG
5'SS Class:
major
3'SS Sequence:
AATGTTTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TTTTCCTAATGT
Flanking Amino Acid:
EMSESRWLYFRVGVDPDQDP
Intron Amino Acid Position:
548

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.2
62.5
43.9
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
72.9
0.52
0.9
67
39.5
Minor 5ss
35.7
-1.6
3.2
47.4
48
Minor BPS
57
0.3
2.2
83.49
43.8

Associated Gene:

Gene:
SLC9A7
Ensembl Gene ID:
ENSAPLG00000005702
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005965
147964252 - 148025962
61711