About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147978836_147984570_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
147978836 - 147984570
Intron Length:
5735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TGTGCTGTACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TGTTACTCACTT
Flanking Amino Acid:
TTPMLSWLNIRVGDRVPSVE
Intron Amino Acid Position:
528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1.2
81.8
38.5
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
66.9
0.38
1.1
58.8
46.1
Minor 5ss
34.8
-1.7
2.7
42.5
44.3
Minor BPS
50
0.08
2
74.16
42.6

Associated Gene:

Gene:
SLC9A7
Ensembl Gene ID:
ENSAPLG00000005702
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005965
147964252 - 148025962
61711