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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147984725_147985951_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
147984725 - 147985951
Intron Length:
1227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTGCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ACTTCTGAAACT
Flanking Amino Acid:
WNFQHMMMFSGLRGAMAFAL
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
68.4
36.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
78
0.63
0.8
75.7
32.9
Minor 5ss
29.1
-2.4
3.4
37.5
47.2
Minor BPS
49.5
0.04
2.3
73.4
44.1

Associated Gene:

Gene:
SLC9A7
Ensembl Gene ID:
ENSAPLG00000005702
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005965
147964252 - 148025962
61711