About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147990259_147993374_R

Intron Information:

Intron Rank:
7
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
147990259 - 147993374
Intron Length:
3116

Sequence Information:

Terminal Dinucleotides:
AT-AC
5'SS Sequence:
CTG|ATATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
CAAATGACTCAAC|G
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GATCCCTTAACA
Flanking Amino Acid:
GAVTGVVTALVTKFTKLHCF
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
35.4
-0.9
3.4
55
44.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
31.7
-1
3.1
34.9
39.7
Minor 5ss
99
1.63
0.6
96.7
10.2
Minor BPS
78.8
0.9
1.2
79.63
35.4

Associated Gene:

Gene:
SLC9A7
Ensembl Gene ID:
ENSAPLG00000005702
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005965
147964252 - 148025962
61711