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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147993517_147993804_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
147993517 - 147993804
Intron Length:
288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTC|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
ACTCTGTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
ACTGTGTTAACT
Flanking Amino Acid:
LNDAVAIVLSSSIVAYQPTG
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.3
79.7
35.3
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
69.8
0.45
0.9
61.5
39.4
Minor 5ss
38.9
-1.2
2.8
52
39.1
Minor BPS
53.7
0.19
2.2
73.16
44.2

Associated Gene:

Gene:
SLC9A7
Ensembl Gene ID:
ENSAPLG00000005702
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005965
147964252 - 148025962
61711