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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147995345_147996328_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
147995345 - 147996328
Intron Length:
984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTGACTTGGACT
Flanking Amino Acid:
LGTAVSCFIIGNLMYGVVKL
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.6
32.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
82
0.72
0.7
75.7
26.5
Minor 5ss
31.6
-2.1
3.1
31.7
42.6
Minor BPS
59.5
0.38
1.5
76.47
40.3

Associated Gene:

Gene:
SLC9A7
Ensembl Gene ID:
ENSAPLG00000005702
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005965
147964252 - 148025962
61711