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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147998614_148025670_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
147998614 - 148025670
Intron Length:
27057

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCTGG
5'SS Class:
major
3'SS Sequence:
TCTCTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GGATTTTTAACT
Flanking Amino Acid:
LHETGLAMIYGLIVGVILRY
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
57
44.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
88.1
0.86
0.7
80.5
31.5
Minor 5ss
38.3
-1.3
3
47.3
48.1
Minor BPS
71.3
0.75
1.2
78.04
38

Associated Gene:

Gene:
SLC9A7
Ensembl Gene ID:
ENSAPLG00000005702
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005965
147964252 - 148025962
61711