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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148085544_148086603_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
148085544 - 148086603
Intron Length:
1060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
LSTSDSSDNESPSTSFSSCS
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
69.9
41.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
37.4
-1.4
2.7
42.4
38.3
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
JADE3
Ensembl Gene ID:
ENSAPLG00000005653
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005869
148085484 - 148112122
26639