About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148086687_148096509_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
148086687 - 148096509
Intron Length:
9823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTTCTCAAGC
Flanking Amino Acid:
PANEQKKPAEVFRKDLISAM
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
86.6
0.82
0.8
80.9
31
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
64.3
0.43
1.8
78.1
37.8

Associated Gene:

Gene:
JADE3
Ensembl Gene ID:
ENSAPLG00000005653
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005869
148085484 - 148112122
26639