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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148096668_148098550_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
148096668 - 148098550
Intron Length:
1883

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAGCG
5'SS Class:
major
3'SS Sequence:
TTTTCATGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCCTCTTTATTT
Flanking Amino Acid:
SPETIPQPSLRVVAEKVKEV
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
65.3
38.9
Major BPS
100
1.24
0.5
100
0
Major PPT
77.9
0.63
0.9
74.2
35.4
Minor 5ss
30.8
-2.2
3.3
39.7
45.7
Minor BPS
63.1
0.49
1.6
74.81
43.2

Associated Gene:

Gene:
JADE3
Ensembl Gene ID:
ENSAPLG00000005653
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005869
148085484 - 148112122
26639