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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148102452_148106945_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
148102452 - 148106945
Intron Length:
4494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGCTG
5'SS Class:
major
3'SS Sequence:
TTTTTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
GCCTTGCTAACT
Flanking Amino Acid:
HVSCALWIPEVSIACPERME
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.7
44.4
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
33.7
-1.9
3.5
46.7
48.6
Minor BPS
46
-0.2
2.3
64.41
46

Associated Gene:

Gene:
JADE3
Ensembl Gene ID:
ENSAPLG00000005653
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005869
148085484 - 148112122
26639