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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148107063_148107530_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
148107063 - 148107530
Intron Length:
468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCATCTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
TTTTCTTCCATC
Flanking Amino Acid:
CKLKTGACIQCSVKSCITAF
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.2
29.4
Major BPS
65
0.37
1.3
76.1
38
Major PPT
75.8
0.58
0.8
70.3
29.4
Minor 5ss
48.9
-0.1
2.4
68.1
42.9
Minor BPS
56.6
0.19
1.9
74.09
37.4

Associated Gene:

Gene:
JADE3
Ensembl Gene ID:
ENSAPLG00000005653
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005869
148085484 - 148112122
26639