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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148108005_148109584_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
148108005 - 148109584
Intron Length:
1580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTAATTTGATA
Flanking Amino Acid:
FMHLRQDLERVRNLCYMVSR
Intron Amino Acid Position:
485

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.9
35.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82.7
0.74
0.7
78.3
30.1
Minor 5ss
35.9
-1.6
3.6
48.1
47.5
Minor BPS
59.3
0.29
1.5
71.73
34

Associated Gene:

Gene:
JADE3
Ensembl Gene ID:
ENSAPLG00000005653
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005869
148085484 - 148112122
26639