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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148120632_148121265_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
148120632 - 148121265
Intron Length:
634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGCGC
5'SS Class:
major
3'SS Sequence:
ACCCTGTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CTCTCGTCCATC
Flanking Amino Acid:
GSGQLQAVPLDAPVSSVALR
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
58.8
42.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
70.2
0.45
0.9
61.2
39.5
Minor 5ss
30.7
-2.2
3.2
33.6
41.9
Minor BPS
41.5
-0.6
2.5
53.52
45

Associated Gene:

Gene:
RGN
Ensembl Gene ID:
ENSAPLG00000005624
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005831
148120469 - 148130420
9952