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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148121449_148122416_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
148121449 - 148122416
Intron Length:
968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGCTGG
5'SS Class:
major
3'SS Sequence:
TGTCTCCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TCACTCTGAACA
Flanking Amino Acid:
KVDPAGRYFAGTMAEEIRPA
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
60.8
46.5
Major BPS
69.8
0.49
1
61
37.5
Major PPT
71.6
0.49
0.9
65.6
35.1
Minor 5ss
42.2
-0.9
3.1
56
48.2
Minor BPS
60.2
0.31
1.4
66.44
39.5

Associated Gene:

Gene:
RGN
Ensembl Gene ID:
ENSAPLG00000005624
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005831
148120469 - 148130420
9952