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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148129575_148130369_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
148129575 - 148130369
Intron Length:
795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAACGGT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTTTTTTTGACA
Flanking Amino Acid:
RQPQAGGIFKITGLGVKGIP
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
65.5
40.5
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
89
0.88
0.8
87.5
30
Minor 5ss
32
-2.1
3.5
46.8
48.5
Minor BPS
79.3
0.92
1
85.48
26.3

Associated Gene:

Gene:
RGN
Ensembl Gene ID:
ENSAPLG00000005624
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005831
148120469 - 148130420
9952