About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148141592_148142756_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
148141592 - 148142756
Intron Length:
1165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATGGGT
5'SS Class:
major
3'SS Sequence:
CTTTGTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
CTTTGTTTAACA
Flanking Amino Acid:
KEPHAGKIFKITGLGVKGIP
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
65.8
39.9
Major BPS
72.7
0.56
1
75
30.1
Major PPT
80.7
0.69
0.9
76.7
36.2
Minor 5ss
25.6
-2.8
3.5
38.3
46.7
Minor BPS
69.3
0.6
1.8
78.6
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005622
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005803
148137326 - 148143384
6059