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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148159406_148161958_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
148159406 - 148161958
Intron Length:
2553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAGCC
5'SS Class:
major
3'SS Sequence:
TTTTTCCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTTAT
U12 Branch Point Sequence:
ATTTAGTTATCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
60.4
37.2
Major BPS
73.5
0.58
1.2
63.7
43.9
Major PPT
88.3
0.86
0.7
81.3
30.7
Minor 5ss
30
-2.3
3.5
42.6
44.4
Minor BPS
50
0.08
2.4
79.42
42.4

Associated Gene:

Gene:
PLCXD1
Ensembl Gene ID:
ENSAPLG00000005609
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005800
148158576 - 148174171
15596