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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148168387_148169557_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
148168387 - 148169557
Intron Length:
1171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGTCC
5'SS Class:
major
3'SS Sequence:
CTATCTCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TTTGCCATGACT
Flanking Amino Acid:
HMVYTTVVVQDILWEVLKWL
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
62
37.3
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
78.5
0.64
0.8
73.6
31.1
Minor 5ss
44.2
-0.6
3
60
44.7
Minor BPS
68.4
0.66
1.7
88.48
36.5

Associated Gene:

Gene:
PLCXD1
Ensembl Gene ID:
ENSAPLG00000005609
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005800
148158576 - 148174171
15596