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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148169714_148172224_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
148169714 - 148172224
Intron Length:
2511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TGATTTCCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
TCCCACTGACTT
Flanking Amino Acid:
IFQCKLCPRNVVPTLRTMWQ
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
78.2
36.4
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
70.5
0.46
0.9
63
39.4
Minor 5ss
38.7
-1.3
3.4
53.8
43.6
Minor BPS
44.5
-0.3
1.8
58.92
44.4

Associated Gene:

Gene:
PLCXD1
Ensembl Gene ID:
ENSAPLG00000005609
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005800
148158576 - 148174171
15596