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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148175635_148176114_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
148175635 - 148176114
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTACTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTACTTTTACA
Flanking Amino Acid:
IKVNLQGPQLSWLYKEATVQ
Intron Amino Acid Position:
617

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
74.7
35.6
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
89.2
0.88
0.7
83.8
31
Minor 5ss
39
-1.2
3
51.2
45.7
Minor BPS
68.6
0.58
1.6
80.14
35.3

Associated Gene:

Gene:
GTPBP6
Ensembl Gene ID:
ENSAPLG00000005592
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005784
148175493 - 148186370
10878