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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148180841_148181285_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
148180841 - 148181285
Intron Length:
445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
AGTTACTCATTT
Flanking Amino Acid:
RGGSRYIMGSGETFMETQNR
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.5
34.8
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
86.8
0.83
0.8
84.8
35.4
Minor 5ss
38.7
-1.3
3.4
56.7
47.6
Minor BPS
48.3
-0
1.9
68.82
41.9

Associated Gene:

Gene:
GTPBP6
Ensembl Gene ID:
ENSAPLG00000005592
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005784
148175493 - 148186370
10878