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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148181357_148182063_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
148181357 - 148182063
Intron Length:
707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTCAA
5'SS Class:
major
3'SS Sequence:
ACTCCACTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTAAAT
Flanking Amino Acid:
QIALAEIPLLRSNLKNEVSQ
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.2
65.2
42.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
63.5
0.3
1
55
39.8
Minor 5ss
38
-1.4
3.1
49.9
46.3
Minor BPS
73.4
0.81
1.5
90.39
32.8

Associated Gene:

Gene:
GTPBP6
Ensembl Gene ID:
ENSAPLG00000005592
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005784
148175493 - 148186370
10878