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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148182195_148183771_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
148182195 - 148183771
Intron Length:
1577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTAA
5'SS Class:
strong_major
3'SS Sequence:
TACATGGCTAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTGTTTTACAT
Flanking Amino Acid:
NVERISSVTKKELEDAWGVK
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.1
25.8
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
54.2
0.1
1.2
51.8
41.6
Minor 5ss
39.6
-1.2
2.8
49.5
46.6
Minor BPS
54.2
0.21
1.8
75.95
41.3

Associated Gene:

Gene:
GTPBP6
Ensembl Gene ID:
ENSAPLG00000005592
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005784
148175493 - 148186370
10878